PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 246aa    MW: 26809.5 Da    PI: 9.5115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018030.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1383130355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++ErrRR+++ + f  L +++P +     +K++K++iL  +++Y+k+L+
  Do018030.1  83 QEHIAAERRRREKMQQQFVALATMVPDL-----TKMDKISILGSTIRYVKHLE 130
                 6799***********************9.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.05980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1183130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1884142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1684142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-1285134No hitNo description
SMARTSM003531.7E-1386135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQQWFQDPSM AQRFGSASAL PNVSFGGAVA VKIDQPSSSS ILSFGALPAA STLNFSGGDW  60
PYCATEGVPQ EPERRIRSHL STQEHIAAER RRREKMQQQF VALATMVPDL TKMDKISILG  120
STIRYVKHLE QKVKTLEKQS ARTTSSKSTV FEDKGHISSS NNQHASGPSG STYGVSGSIP  180
TVEASIHDNT VLLKISCERR SGVLVMIISK LESLSLFIIN TSVLPFSDSY FSINITAKAR  240
IPCPNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893ERRRRE
28994RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665937.13e-75PREDICTED: transcription factor bHLH18-like
TrEMBLK3ZLF01e-86K3ZLF0_SETIT; Uncharacterized protein
STRINGSi027407m4e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-31bHLH family protein